This page lists pasts talks at the CBBP seminars (2002 to 2023). The Computation Biology and Biological Physics group is now part of COSHE. See the calendar for future and recent COSHE seminars.

2023

• Nov 08: Andreas Nilsson and Jesper Sjolte, Geology
  Synchronising and synthesising paleo data with chronologic uncertainties
• Oct 30: Dmytro Perepolkin, CEC
  Introduction to Bayesian Parametric Quantile Regression
• Oct 03: Silas Boye Nissen, Stanford University
  The molecular mechanism of the core planar cell polarity complex elucidated with single-molecule imaging techniques in live Drosophila wing cells
• Jun 14: Kristoffer Carlsson
  Julia for Scientific Computing
• May 16: Ullrika Sahlin, CEC
  An introduction to communicating uncertainty when producing scientific advice
• May 09: Najmeh Abiri
  Developing an AI model to classify tick species in a citizen science project: Challenges and solutions
• May 03: Christoffer Åberg, University of Groningen
  Exploring glass-like characteristics of intracellular motion in mammalian cells
• Mar 13: Emil Andersson
  Spectroscopically guided tumour delineation by machine learning: Towards personalised tumour diagnostics
• Feb 27: Nikolay Oskolkov
  Dimension reduction techniques for Life Science applications
• Jan 13: Daqu Zhang
  Deep learning models for patient selection based on nodal status

2022

• Dec 05: Jonas Tegenfeldt
  Order-disorder transition in DNA solutions in microfluidic arrays
• May 23: Stefan Wallin, Memorial University of Newfoundland, Canada
  Folding, fold switching and energy landscape of regulatory protein RfaH
• May 18: Suze Julia Roostee
  Spatial and quantitative analysis of IHC stains in breast cancer
• May 02: Anders Björkelund
  (Rapid) triage of chest pain patients with respect to acute myocardial infarction
• Apr 28: Victor Olariu Ahnell 
  Cell reprogramming: from a systems perspective.
• Apr 04: Malin Hjärtström
  Prediction model for breast cancer treatment.
• Mar 30: Carl Troein
  From biochemical reactions to the fate of stem cells
• Mar 21: Patrik Eden
  Basic nuisance: size, learning rate, epochs
• Mar 03: Fredrik Bertilsson
  Modelling of gene regulatory and spatial mechanisms which pattern the early human neural tube
• Feb 21: Daesung Cho
  Evolutionary properties of neural networks: Exploration of robustness and evolvability in the genotype-phenotype map
• Feb 07: Carl Troein
  Challenges in MCR-ALS analysis of spectroscopic imaging data

2021

• Dec 13: Nils Ryde
  Spectroscopy challenges in astrophysics
• Dec 6: Anders Irbäck
  Putting lattice proteins on a quantum annealer
• Nov 22: Axel Nyström
  Serial ECG analysis using machine learnin
• May 24: Emil Andersson
  A multi-scale dynamical model for T cell development
• May 17: Victor Olariu
  Models of direct cell reprogramming
• May 3: Tobias Ambjörnson
  Pandemics modelling 101
• April 12: Anders Irbäck
  Simulating protein droplet phase diagrams

2020

• Nov 30: Carl Troein
  Infrared spectroscopy methods and data processing challenges
• Nov 16: Björn Linse
  Multiple imputation by chained equations
• Mar 9: Emil Andersson
  Constructing energy landscapes of logical gene networks
• Mar 2: Anders Irbäck
  Simulating protein droplet formation
• Feb 24: Jens Krog
  Photophysical image segmentation
• Feb 10: Victor Olariu
  3D model of the neural tube patterning

2019

• Dec 16: Carl Troein
  OCTAVVS: A graphical toolbox for high-throughput preprocessing and analysis of vibrational spectroscopy imaging data
• Dec 9: Daniel Nilsson
  Finite-size scaling analysis of protein droplet formation
• Dec 2: Albertas Dvirnas
  Similarity analysis for time series using a matrix profile
• Nov 28: Ludvig Lizana, Dept. of Physics, Umeå University
  Modelling protein search on human DNA
• Nov 25: Syahril Siregar
  Non-negative matrix factorization (NNMF) in hyperspectral imaging
• Nov 18: Björn Linse
  Neural network design for survival analysis
• Nov 11: Behruz Bozorg
  Towards studying liquid-liquid phase separation in a simple HP protein model, using field theoretic simulations
• Nov 4: Anders Björkelund
  Predicting heart disease in the emergency room
• Oct 21: Bo Söderberg
  Transforming interacting polymers into a field theory, simulated using complex Langevin dynamics
• Oct 14: Tobias Ambjörnsson
  Random pairing clustering
• Oct 7: Carsten Peterson
  Artificial neural networks as generic function approximators
• Sep 30: Najmeh Abiri
  Statistical inference with deep latent variable models
• Sep 23: Patrik Edén
  How to win the FDA omics mislabeling challenge
• Jun 14: Adriaan Merlevede
  Direct reprogramming of fibroblasts to neurons
• May 27: Yuan Li
  A foreign gene in competition with its native counterpart in protein dimer formation
• May 20: Albertas Dvirnas
  High-resolution dots in nanochannels
• May 6: Tobias Ambjörnsson
  Bacterial species identification using DNA barcodes
• Apr 29: Jens Krog
  Shallow learning: Bayesian image segmentation
• Apr 15: Mattias Ohlsson
  Two 'new' collaborations
• Apr 8: Daniel Nilsson
  Simulating protein droplet formation
• Apr 1: Victor Olariu
  Naive and Primed Pluripotent Stem Cells
• Mar 25: Anders Irbäck
  Dissecting protein stability changes in crowded environments by NMR and Monte Carlo
• Mar 11: Björn Linse
  Survival analysis of heart transplants using machine learning
• Feb 11: Carl Troein
  Correction and analysis of large FTIR image datasets
• Jan 28: Vinay S Swaminathan, Div. of Oncology and Pathology
  Encoding mechanical information through multi molecular structure: Lessons from Directed Cell Migration

• 2018

• Oct 29: Patrik Edén
  Growing ANN topologies
• Oct 8: Albertas Dvirnas
  Structural variations in densely labelled DNA maps
• Sep 10: Tomas Martin-Bertelsen
  Analysis of short time-series RNA-Seq expression data to elucidate the soil organic matter decomposition mechanisms in ectomychorrizal fungi
• Mar 5: Peter Jönsson, Physical Chemistry
  Interactions between membrane-associated molecules – from aggregating proteins to immune-cell contacts
• Feb 26: Yuan Li & Anders Irbäck
  What will happen if a foreign gene meets its native counterpart?
• Jan 15: Joakim Stenhammar, Physical Chemistry
  Correlations and collective behaviours in suspensions of swimming microorganisms

• 2017

• Jun 28: Jens Krog, University of Southern Denmark
  Bayesian analysis of unfolding DNA
• Jun 12: André Larsson
  Thesis presentation
• May 22: Daniel Nilsson
  Markov state models for studying protein crowding dynamics
• Feb 8: Henrik Jönsson
  How do you develop a computable flower and who needs it?

• 2016

• Dec 19: Adriaan Merlevede
  The chemistry of artificial life
• Dec 12: Carl Troein
  A dynamical model of the regulation of Fenton chemistry in the litter decomposer Paxillus involutus
• Dec 5: Najmeh Abiri
  Improving Imputtation using Stacked Denoising Autoencoders
• Nov 28: Mattias Ohlsson
  Image segmentation using deep convolutional neural networks
• Nov 21: Pawel Krupinski
  TBA
• Nov 15: Lucy Colwell, Cambridge
  Using evolutionary sequence variation to build predictive models of protein structure and function
• Nov 7: George Napolitano, Mathematical Statistics
  Ising model on Random Triangulations
• Oct 24: André Larsson
  Models of auxin signalling in the shoot apical meristem and initiation of root hairs
• Oct 17: Tobias Ambjörnsson
  Gene and plasmid ID using DNA barcodes and cell phone based microscopy
• Oct 3: Tatyana Turova, Mathematical Statistics
  Phase transitions in the one-dimensional Coulomb gas ensembles
• Jun 16: Alexander Schug, KIT, Karlsruhe
  Protein and RNA structure prediction via co-evolutionary analysis
• Jun 9: Björn Linse
  Classification for heart transplant decisions with heterogeneous and missing data
• May 25: Behruz Bozorg
  Models of mechanics and growth in developmental biology: A Computational Morphodynamics approach
• May 31: Anna Bille
  Peptide folding and local unfolding of SOD1 in the presence of interacting macromolecular crowders – a Monte Carlo approach
• May 16: Carl Troein
  Activation and repression in circadian clock networks
• May 9: Anders Irbäck
  Local unfolding of the protein SOD1 in the presence of protein crowders
• May 2: Karl Fogelmark
  On gene regulatory networks and data fitting
• Apr 18: Adriaan Merlevede
  Crossover algorithms for variable-length genomes
• Mar 21: Bo Söderberg
  Apollonian Tiling and the Lorentz Group
• Apr 4: Denni Rögnvaldsson
  Self-organising approaches for deviation detection
• Mar 1: Charles Kurland
  Modular protein domains track genome evolution
• Feb 15: Martin Trulsson, Theoretical Chemistry
  Shear flows of non-Brownian and Brownian hard sphere suspensions (from jammed to glassy states)
• Feb 1: Najmeh Abiri
  Unbiased Optimization of Microarray Pre-processing
• Jan 25: Victor Olariu
  Nanog, Oct4 and Tet1 interplay in establishing pluripotency
• Jan 18: Pawel Krupinski
  Regulation of T-cell commitment

• 2015

• Dec 7: Björn Linse
  Efficient simulations of proteins in crowded environments
• Nov 23: Anna Bille
  Crowding continuation
• Nov 16: Henrik Jönsson
  When is it time to divide?
• Oct 26: Tobias Ambjörnsson
  Plasmid analysis using DNA barcodes
• Oct 19: Ingemar André, Biochemistry & Structural Biology
  Computational Design of Protein and Peptide Self-assembly
• Oct 5: Behruz Bozorg
  Mechanical signals and morphogenesis
• Sep 28: André Larsson
  A Boolean approach to inferring biological interactions
• Sep 14: David Ansari
  The impact of Human Leukocyte Antigen on outcome in heart transplantation
• Sep 21: Carl Troein
  Separation of activation and repression in transcriptional networks
• Jun 1: Patrik Edén
  Estimating concordance for machine learning
• May 25: Anders Irbäck
  Effects of macromolecular crowding on a miniprotein
• May 21: Jonas Kalderstam
  PhD thesis presentation: Neural network approaches to survival analysis
• May 11: Michaela Reiter-Schad
  PhD thesis presentation: Statistical physics of DNA: Melting and confinement effects
• May 4: Jonas Kalderstam
  Identifying risk groups by optimizing on the area under the survival curve
• Apr 27: Joakim Stenhammar, Physical Chemistry
  Thermodynamics and phase equilibria of self-propelled colloids
• Apr 20: Bo Söderberg
  (Non-)conservation in 2D discrete dynamics
• Apr 13: Mattias Ohlsson
  Deep neural networks
• Mar 23: COMPUTE seminar
  -
• Mar 20: Jes Frellsen, Department of Engineering, University of Cambridge
  Bayesian generalized ensemble Markov chain Monte Carlo
• Mar 2: Dimitrios Floudas, Microbial Ecology
  Evolution of wood decay in Agaricomycetes: Clues from comparative genomics.
• Feb 23: Carsten Peterson
  T-cell specification is an irreversible process – insights from computational modelling of a minimal network architecture
• Feb 9: Håkan Wallander
  Soil – reflections on the basis of our existence
• Feb 2: Tomas Martin-Bertelsen
  Molecular interactions controlling soil carbon sequestration (MICCS) – Mapping transcriptome data to spectral changes
• Jan 26: Henrik Persson, Immunology
  From fakhir cells to silicone blood vessels

• 2014

• Dec 8: Stefan Wallin
  Lipoproteins: a new challenge for molecular modeling
• Nov 24: Najmeh Abiri
  A set of Python/Cython wrappers for extrapolation based solvers for differential algebraic systems
• Nov 10: Henrik Jönsson
  Revisiting the stem cell regulatory network in plants
• Nov 3: Pawel Krupinski
  -
• Oct 27: Anna Bille
  Crowding
• Sep 29: Tobias Ambjörnsson
  Nano-channel based DNA barcoding: an overview of some recent progress
• Sep 22: Karl Fogelmark
  The digital organism
• Sep 15: Christian Holzgräfe
  Protein fold switching in coarse-grained models
• May 26: André Larsson
  Radial patterning in the shoot meristem
• May 19: Charleston Noble
  A Pair Hidden Markov Model for Detecting Structural Variation in DNA Melting Maps
• May 12: Christian Holzgräfe
  Hybrid Monte-Carlo
• Apr 28: Siddhaling Urolagin, Dept. of Experimental Medical Science
  -
• Apr 14: Carl Troein
  Optimizing ODE models in C++
• Apr 7: Heiner LinkeSolid state physics
  Parallel computation using self-propelled biological agents in designed networks
• Mar 31: Jonas Kalderstam
  Survival Likelihood
• Mar 3: Patrik Edén
  Preprocessing protein array data
• Feb 20: Ingve Simonsen, Norwegian University of Science and Technology, Trondheim
  Cascading failures in complex networks: Generic modeling and examples of power blackouts and the domino effect
• Feb 24: Anders Irbäck
  Aggregation of apolipoprotein A-I
• Feb 13: Flavio SenoPadua University
  Exploring the universe of protein folds
• Feb 3: Mauno Vihinen, Dept of Experimental Medical Science
  Systematic description and prediction of DNA, RNA and protein variations and their effects
• Jan 27: Joop Vermeer, University of Lausanne
  Talking with the neighbors: Understanding spatial accommodation during plant development
• Jan 20: Mattias Ohlsson
  -
• Jan 13: Bo Söderberg
  Energy conservation (or not) in discrete time Newtonian dynamics

• 2013

• Dec 16: Stefan Wallin
  How do new protein folds arise?
• Dec 9: Bettina Greese
  Towards new insights from an extended model for polarity of root hair cells
• Dec 2: Michaela Reiter-Schad
  A simplified model for DNA melting
• Nov 25: Ramune Kuktaite, SLU
  Understanding bio-based materials structure and function: a closer step towards sustainable uses
• Oct 21: Lloyd Sanders
  Canonical epidemics on networks: another look
• Oct 7: Behruz Bozorg
  Stress and strain as developmental cues in plants
• Sep 30: Henrik Jönsson
  ERC interview rehearsal
• Sep 23: Pawel Krupinski
  Why do we need mechanical models of tissues and why we still do not have what we want?
• Sep 16: Victor Olariu
  Gene Network Landscapes by Numbers
• Jun 10: Karl Fogelmark
  Keeping the error in check
• Jun 3: Christian Holzgräfe
  Exploring protein fold switching in an off-lattice hydrophobic-polar model
• May 20: André Larsson
  Increased stability through KANADI autocatalysis
• May 13: Carl Troein
  Phytophthora and potatoes
• May 6: Juan MR Parrondo, Universidad Complutense de Madrid
  Diffusive proofreading in transcription
• Apr 29: Jonas Kalderstam
  Python – My scientific hammer
• Apr 15: Sigurður Jónsson
  Mechanical resistance in unstructured proteins
• Apr 22: Tobias Ambjörnsson
  Hitchhiker's guide
• Apr 8: Lars Holmgren, Department of Oncology-Pathology, Karolinska Institute
  Formation and dissociation of multicellular structures in development and cancer
• Mar 25: Patrik Edén
  High throughput pre-processing – a project worth weighting for?
• Mar 18: Charleston Noble
  The role of caretakers in disease dynamics
• Mar 12: Philip Gerlee, Sahlgrenska Cancer Center & Mathematical Sciences, Gothenburg
  The impact of phenotypic switching on brain tumour growth and invasion
• Mar 4: Anders Irbäck
  Aggregate geometry in amyloid fibril nucleation
• Feb 25: Stefan Wallin
  Antibody-peptide interactions.
• Feb 18: Arnab Bhattacherjee
  How advantagerous is it to be disordered?
• Feb 11: Bo Söderberg
  Leapfrog and conservation
• Feb 4: Erica Manesso
  Computational modeling of T-cell formation kinetics: output regulated by initial proliferation-linked deferral of developmental competence at early stages
• Jan 28: Henrik Jönsson
  Incoherent feedforward loops in a spatial context
• Jan 14: Bettina Greese
  Modelling planar cell polarity in the Arabidopsis root epidermis

• 2012

• Dec 17: Simon Pigeon
  Diffusion of particle in crowded system
• Dec 3: Charles Kurland, Dept. of Biology
  Cataclysmic rooting of the current phylogenetic tree
• Nov 26: Lloyd Sanders
  Stochastic SIRS epidemics in city networks
• Nov 19: Mattias Ohlsson
  Extreme learning machines
• Oct 22: Pawel Krupinski
  Finite element method modeling of plant tissue
• Oct 15: Carsten Peterson
  The Nobel Prize in Physiology or Medicine 2012
• Oct 8: Victor Olariu
  Molecular dynamics of stem cells differentiation and reprogramming
• Sep 17: José Teles
  Computational modeling in the hematopoietic system (thesis presentation)
• Sep 10: Carl Troein
  A digital organism for exploring clock evolution
• Jun 18: Anders Tunlid, Microbial Ecology
  Soil molecular biology – towards a new understanding of carbon and nutrient cycling in forest soils Jun 11: Karl Fogelmark The circadian clock in Arabidopsis and Ostreococcus
• Jun 4: Leif Bülow, Department of Pure and Applied Biochemistry
  Hemoglobins – a radical view
• May 28: Behruz Bozorg
  Modeling mechanics in plant cells by using triangular biquadratic springs
• May 21: Erik Werner, University of Gothenburg
  DNA extension in rather thin channels
• May 14: Christian Holzgräfe
  Mutation and binding-induced fold switching
• May 7: Iskra Staneva
  Monte Carlo approach to binding and aggregation of disordered peptides
• Apr 25: Stefan Wallin
  Mechanisms of protein-DNA interactions
• Apr 2: Michaela Reiter-Schad
  Extended Azbel approach for DNA melting profiles
• Mar 19: Jonas Kalderstam
  Training neural networks on incomplete data using genetic algorithms
• Mar 12: Tobias Ambjörnsson
  Transfer matrices with applications to protein–DNA binding
• Feb 27: Sigurður Jónsson
  Accelerating atomic-level protein simulations by flat-histogram techniques
• Feb 20: Arnab Bhattacherjee
  Intrinsically disordered proteins at work: Coupled folding-binding in a simple model
• Feb 13: Anders Irbäck
  Exploring the conformational ensembles sampled by Aβ and α-synuclein
• Feb 6: Stefan Wallin
  Characterizing the peptide binding properties of proteins: a Monte Carlo approach
• Jan 30: Patrik Edén
  Still a simple population model for neurosphere formation: the quest for b
• Jan 23: Erica Manesso
  Computational modelling of thymocytopoiesis reveals the importance of proliferation at early stages
• Jan 16: Anna Bille
  Misfolding of SOD1 and TDP-43, role in ALS

• 2011

• Dec 19: Lloyd Sanders
  Two-strain mutant SIS modelling: Stochasticity vs. Mean Field
• Dec 12: Henrik Jönsson
  The 10000 kronor question, or Can auxin flux dynamics be described in a single model?
• Dec 5: Bo Söderberg
  Area preserving maps: the mystery with the missing parameter
• Nov 28: Mattias Ohlsson
  Random forest classification and modeling survival for heart transplantation patients
• Nov 22: Erika Kuchen, John Innes Center, Norwich
  Feedback between polarity, growth and geometry in leaf shape generation
• Nov 17: Bettina Greese, Albert Ludwigs University, Freiburg
  Trichome pattern formation: New insights from mathematical modelling and quantitative analysis
• Nov 14: Michael Green, Data Intelligence, Copenhagen
  Sales modeling and the art of quantifying media’s effect on consumer behavior
• Nov 7: José Teles
  Stem cell fate decisions – on the nature of landscapes
• Oct 24: Victor Olariu
  Minimal architecture with computational means for stem cell commitment and reprogramming
• Oct 17: Pawel Krupinski
  Modeling interplay of mechanical and biochemical signals in morphogenesis
• Oct 10: Erik Alexandersson, Swedish University of Agricultural Sciences
  Late Blight Resistance in Potato – an overview of related research at SLU Alnarp and Lund University
• Oct 3: Iskra Staneva
  Grabbing the master watchman with an EF-hand protein
• Sep 26: Nikolay Oskolnikov, DTU Nanotech
  Cold denaturation of Lennard-Jones helices with applications to alpha-helical polypeptides
• Sep 19: Carl Troein
  Worming the EARLY BIRD into the Arabidopsis clock
• Sep 12: Wouter Boomsma
  Increasing the efficiency of protein structure calculations
• June 13: Charles Kurland, Dept. of Biology
  Evolution differently: the origin of prokaryotes
• May 30: Heiner Linke, Nano Center, LTH
  Constructing molecular motors
• May 16: Christian Holzgräfe
  HP model
• May 9: Tobias Ambjörnsson
  Forced dynamics in crowded systems
• May 2: Susanne Widell, Dept. of Biology
  Cancer and plants
• Apr 18: Michaela Schad
  DNA melting
• Apr 11: Björn Samuelsson
  Evolutionary modeling and the complexity of natural selection
• Apr 4: Arnab Bhattacherjee
  Designing Misfolded Proteins: A Statistical Theory Based Approach
• Mar 28: Jeremy Gruel
  Modeling the spatial gene expression in the shoot apical meristem
• Mar 14: Sigurdur Aegir Jónsson
  Wang-Landau simulation of alpha-synuclein
• Mar 7: Carsten Peterson
  Molecular serum portraits in patients with primary breast cancer predict the development of distant metastases
• Feb 21: Anders Irbäck
  Monomers and dimers of Aβ42 variants
• Feb 14: Stefan Wallin
  A simple model for coupled folding and binding
• Feb 7: Ajith Harish, Dept. of Biology
  Tracing the evolution of RNA and protein structure in the ribosome
• Jan 31: Per Petersson, Med. fak.
  Brain control of motor programs in health and disease
• Jan 24: Dag Arhén, Dept. of Biology
  Introduction to next generation sequencing with preliminary results for fungal pathogenicity
• Jan 17: Patrik Edén
  Pre-clinical drug prioritization via prognosis-guided genetic interaction networks

• 2010

• Dec 20: Erica Manesso
  Dynamics Inside the Hematopoietic Hierarchy in Adult Mice
• Dec 6: Lloyd Sanders
  Single File Diffusion and First Passage Times in Biological Systems
• Nov 29: Bo Söderberg
  Quasiperiodicity and Pattern Formation
• Nov 22: Mattias Ohlsson
  Decoding and simulations of neurons
• Nov 8: José Teles
  To be or not to be... – fate decision in hematopoietic stem cells
• Nov 1: Victor Olariu
  1. Erythroid Lineage Dynamics, 2. Ground State Differentiation and Reprogramming in ES cells system.
• Oct 25: Johan Nilsson
  Virtual Cross-matching in Heart Transplantation
• Oct 18: Pawel Krupinski
  Why do we need better mechanical models of living cells?
• Oct 4: Namiko Mitarai, Niels Bohr Institute
  Choice of Synonymous Codons and Ribosome Traffic
• Sept 27: Karoline Wiesner, LU & Univ. of Bristol
  Information and all that – A summary of four months exploration into information acquisition and sharing of bio-systems
• Sep 20: Bernhard Mehlig. Univ of Gothenburg
  Statistics of genetic variation in a changing environment
• Sep 13: Iskra Staneva
  Can we do helices?
• Sep 6: Martin Linden, Caltech
  Understanding the cell shape and locomotion of Spiroplasma
• Aug 30: Philippe Robert, LU/ENS-Lyon
  Comparison of Evolutionary Algorithms to optimise biological network parameters.
• Jun 22: Mile Gu, Univ of Singapore
  Can the laws of biology be derived?
• Jun 7: Daniel Otzen, Univ of Aarhus
  Protein-lipid interactions and the biophysics of cytotoxicity
• May 31: David Kelly, Univ of Bristol
  Causal state models of Flourescence Resonance Energy Transfer (FRET)
• May 24: David Gisselsson Nord, Dept of Clinical Genetics
  Chromosome segregation errors in cancer
• May 17: Jérémy Gruel
  Stabilizing the SAM
• May 10: Philip Gerlee, Niels Bohr Institute
  Structural correlations in bacterial metabolic networks
• May 3: Patrik Brundin, Experimental Medical Science
  Cell therapy in Parkinson's disease: will it fly?
• Apr 29: Nick Monk, Univ of Nottingham
  Models for spaced cell fate assignment in plants and animals
• Apr 26: Patrik Sahlin
  Modelling the development of phyllotactic patterns at the shoot apical meristem of Arabidopsis thaliana
• Apr 12: Martin Nilsson Jacobi, Chalmers
  Targeted self-organization
• Apr 9: Carl Troein, Univ of Edinburgh
  The life and timekeeping of Ostreococcus tauri
• Mar 29: Erica Manessa
  Modeling pancreatic beta cell lifetime
• Mar 22: Sigurdur Aegir Jónsson
  A minimal sequence code for switching protein structure and function
• Mar 15: Petros Koumoutsakos, ETH, Zürich
  Multiscale simulations using particles
• Mar 8: Pontus Melke
  Cell signaling: a systems approach
• Mar 1: Anders Irbäck
  Conformational switching in the HP model
• Feb 22: Christopher Sturk
  A study of the shoot apical meristem by means of computational modeling and microarray analysis
• Feb 15: Dag Ahrén, Dept of Biology
  Fungal host interactions – Are you a friend or a foe?
• Feb 8: Thomas Laurell, Dept of Electrical Measurements
  Acoustic separation of cells
• Feb 1: Mattias Olsson
  Some active/going todo projects
• Jan 25: Stefan Wallin
  PDZ domain-peptide interactions: some new results
• Jan 18: Henrik Jönsson
  Beräkningsbiologi och biologisk fysik
• Jan 11: Patrik Éden
  ANN and Cox regression

• 2009

• Dec 14: José Teles
  Lineage commitment and differentiation in hematopoiesis
• Dec 7: Ingemar André, Dept of Chemistry
  Structure prediction and design of protein assembly
• Nov 30: Pawel Krupinski
  Modeling the dynamics of the cells – plants and animals
• Nov 23: Jérémy Gruel, Univ of Rennes
  -
• Nov 16: Iskra Staneva
  More peptide binding
• Nov 9: Henrik Jönsson
  Models of genes, hormones, and physical forces in the plant shoot
• Oct 26: Tobias Ambjörnsson
  What is he doing there?
• Oct 19: Erica Manesso, Univ of Padova
  Dynamics of pancreatic beta cells
• Oct 12: Christopher Sturk
  An analysis of a synthetic transcriptional oscillator
• Oct 5: Lloyd Sanders, Univ of Auckland
  Periastron advance effects in extrasolar planetary systems
• Sep 28: Bo Söderberg
  Clustering in random graphs
• Sep 24: Victor Olariu, Univ of Sheffield
  Nonlinear modelling of stem cell dynamics
• Jun 15: Carl Troein, University of Edinburgh
  The origins of complexity in circadian clocks
• Jun 8: Karoline Wiesner, University of Bristol
  Landauer's principle lurking behind measures of complexity
• Jun 1: Ralf Eichhorn, Nordita
  Transport phenomena in non-equilibrium systems: Paradoxes and benefits of noise
• May 25: Kajsa Paulsson, Dept of Experimental Medical Science
  Antigen presentation in the context of MHC class I – focus on quality control
• May 18: Anders Irbäck
  The initial stages of protein aggregation
• May 11: Peter Apell, Chalmers
  Biological physics in Göteborg
• May 4: Patrik Sahlin
  Reintroducing stem cells to plant development modeling
• Apr 27: Mattias Larsson, Swedish University of Agricultural Sciences
  Information transfer in chemical signalling: Emitters, signals and receivers
• Apr 6: Carsten Peterson
  Serum proteome profiling of breast cancer
• Mar 30: Federico Collechia
  Novel glioma stem cell surface markers – prediction via cross-database searches
• Mar 16: Stefan Wallin
  Aggregation of two short peptide sequences with a knowledge-based potential
• Mar 2: Jonas Tegenfeldt, Solid State Physics
  Melting mapping of DNA in small channels
• Feb 23: Patrik Éden
  A simple population model for neurosphere formation
• Feb 16: José Teles
  Genetic regulation of hematopoiesis
• Feb 9: Pawel Krupinski
  The logic of mammalian embryogenisis
• Feb 2: Mattias Olsson
  Some active/going todo projects
• Jan 26: Morten Krogh
  Mass spectrometry with an orbitrap mass analyzer
• Jan 19: Johan Nilsson, Thoracic Surgery
  Heart and lung transplantation: Prediction of long-term survival
• Jan 12: Iskra Staneva
  Binding to a PDZ domain

• 2008

• Dec 15: Erik Börjesson
  Adsorption at surfaces, what forces interact?
• Dec 8: Bo Söderberg
  Fitting a factorized model to rectangular data
• Dec 1: Mikael Borg, Copenhagen University
  Instrinsically disordered proteins in regulatory processes
• Nov 17: Helena Stjernberg, Lund University Libraries / Henrik Jönsson
  Parallel publication in LUP
• Nov 10: Simon Mitternacht
  A revision of our protein model... and a few words about Alzheimers
• Oct 27: Giorgio Favrin, Univ of Cambridge
  Structural reorganization and potential toxicity of oligomeric species
• Oct 20: Anders Irbäck
  Formation and growth of oligomers: an MC study of a protein tau fragment
• Oct 13: Pontus Melke
  Benefits of having a shape
• Oct 6: Alberto Imparato, Univ of Aarhus
  Work and heat probability distribution of driven Brownian particles: Theory and experiments.
• Sep 29: Patrik Sahlin
  Cell division in Drosophila wing primordium and plant tissue.
• Sep 22: Carsten Peterson
  Hematopoiesis by the numbers and by design.
• Sep 15: Federico Collechia
  Dimensionality and dynamics in the behavior of C. Elegans
• Sep 8: Stefan Wallin
  Thermodynamics and kinetics of protein knot formation.
• Jun 11: Michael Green (dissertation lecture)
  Improving diagnosis of acute coronary syndromes in an emergency setting: A machine learning approach
• May 26: José Teles
  In silico gene expression microdissection in heterogeneous cell population samples
• May 19: Björn Samuelsson
  Aspects of nonhuman intuition: testing how horses learn
• May 12: Anders Svensson (Diploma work presentation)
  Periodiska fixpunkter till en modell av auxintransport
• May 5: Pawel Krupinski
  Patterns of growth – simulations of biomechanical deformation in plant tissue
• Apr 28: Patrik Edén
  Simultaneous regulation of proliferation and self-renewal
• Apr 21: Ben Smith, Physical Geography and Ecosystems Analysis
  Transcending time, space and scientific tradition in a global model of vegetation and ecosystem response to climate change
• Apr 14: Mattias Ohlsson
  Exini Diagnostics
• Apr 7: Eric Warrant, Cell and Organism Biology
  A tale of two fishes: the visual ecology of two deep-sea predatory fishes
• Mar 31: Michael Green
  Machine learning and the art of covering too many topics in 45 minutes
• Mar 17: Bo Söderberg
  Chemical reaction dynamics with finite molecule numbers
• Mar 10: Lars Gislén
  Ancient mathematical astronomy
• Mar 3: Henrik Jönsson
  Mechanisms for spontaneous pattern formation in biology
• Feb 25: Simon Mitternacht
  Report from Biophysical Society 52nd Annual Meeting
• Feb 20: Stefan Wallin, Harvard
  Redesign of PDZ-PDZ domain interfaces
• Feb 11: Sven Nelander, Gothenburg
  Using drug combinations to construct regulatory models of cancer cells
• Feb 4: Pontus Melke
  Planar polarity and root hair positioning
• Jan 28: Anders Irbäck
  Force-induced unfolding of a fibronectin module
• Jan 21: Katarina Sjögreen Gleisner, Radiation Physics
  Modeling and prediction of the biodistribution and absorbed doses in radionuclide therapy
• Jan 14: Federico Colecchia
  In-silico investigation of tissue-specific transcriptional regulatory networks

• 2007

• Dec 17: Christian Balkenius, Cognitive Science
  Attention and anticipation
• Dec 10: Stanley Brown, Copenhagen Univ.
  Genetics and carbon nanotubes
• Dec 3: Carsten Peterson
  Embryonic stem cells revisited – lineage determination and epigenetics
• Nov 27: Paul Higgs, McMaster Univ.
  Evolution of the genetic code
• Nov 19: Liwen You
  Computational prediction models for proteolytic cleavage and epitope identification
• Nov 12: Jörgen Ripa, Theoretical Ecology
  Gradual evolution in stochastic environments – on the feedback between environmental fluctuations, population dynamics and long term evolutionary change
• Nov 5: Thore Husfeldt, Computer Science
  A new algorithm for Steiner trees with applications to signaling pathways and phylogenetic trees
• Oct 29: Thoas Fioretos, Clinical Genetics
  Molecular changes in leukemia
• Oct 22: Patrik Sahlin
  A pattern generating model inspired by plant phyllotaxis
• Oct 15: Pawel Krupinski
  Mechanics of plant cells or what finite elements can do
• Oct 8: Morten Krogh
  Sequencing technologies
• Oct 1: Patrik Edén
  False Discovery Rate: the rate of false discoveries or a false rate of discoveries?
• Sep 24: Michael Green
  On the dark side of artificial neural network ensembles
• Sep 17: Mattias Ohlsson
  Survival after heart tranplantation – an analysis using ANN
• Sep 10: Stefano Luccioli, Florence
  Reconstructing the free energy landscape of a protein model from mechanical unfolding manipulations
• Sep 3: Alex Gremiaux, Toulouse/Chalmers
  Relation between protein and water dynamics: Low frequency dielectric study of relaxation processes in hydrated protein
• Aug 13: Karsten Goede, Leipzig
  AFM experiments on specfic adhesion of peptides on semiconductors
• Aug 7: Jose Teles, Lisbon
  RheugulationDB: an integrative tool for the study of rheumatoid arthritis
• Jun 11: Liwen You
  Using uncertainty and Gaussian process to detect targets in pathogens' genomes
• Jun 4: Pramod Wangikar, IIT, Mumbai
  Prediction of Protein Structure Using Backbone Fragment Library and a Multilayered Learning Algorithm
• May 28: Vijay Chickarmane, Caltech
  Robust network dynamics of DNA damage control
• May 21: Sigismund Kobe, Dresden
  Exact energy landscapes of proteins using a coarse grained model
• May 14: Rikard Alm, Biochemistry
  Proteome profiling of strawberry and characterization of a Bet v 1-homologous allergen
• May 7: Mikael Akke, Biophysical Chemistry
  Protein unfolding studied by nuclear spin relaxation
• Apr 23: Cecilia Ritz
  Classification and computational methods in gene expression data analysis
• Apr 16: Ronald Kröger, Cell and Organism Biology
  Physical aspects of vertebrate color vision
• Apr 2: Carl Troein
  Gene regulatory networks: dynamics and stability
• Mar 26: Lund Systems Biology Group
  Mathematical aspects of systems biology
• Mar 19: Bo Söderberg
  Mode locking, binary sequences, and the Farey tree
• Mar 12: Hans-Uno Bengtsson
  Undergraduate education, Theoretical Physics
• Mar 5: Henrik Jönsson
  Plants solve the da Vinci code
• Feb 26: Igor N. Berezovsky, Harvard
  Thermophilic adaptation through the looking glass of physics
• Feb 19: Simon Mitternacht
  Differences in solution behavior between four semiconductor-binding peptides
• Feb 12: Anders Irbäck
  Self-assembly into a beta-barrel
• Feb 5: Wolfhard Janke, Leipzig
  Geometrical picture of criticality
• Jan 29: Sayan Mukherjee, Duke Univ.
  Integrating multiple genomic sources and modelling tumor progression – borrowing strength
• Jan 22: Yingchun Liu
  Statistical and functional analysis of genomic and proteomic data
• Jan 15: Federico Colecchia
  Database/software for tissue-specific investigation of gene regulation
• Jan 8: Pontus Melke
  Modeling bacterial growth

• 2006

• Dec 18: Patrik Edén
  A physicist's stem cell definition
• Dec 11: Carsten Peterson
  Stem cell switch dynamics
• Dec 4: Carl Troein
  The why of regulation
• Nov 27: Morten Krogh
  Local recurrence of breast cancer
• Nov 20: Ulf Olsson, Physical Chemistry
  Surfactant self-assembly in micelles and microemulsions
• Nov 13: Markus Ringnér
  Challenges in the use of microarray data for classification
• Nov 06: Christer Wingren, Immunology
  High-throughput cancer proteomics using recombinant antibody microarrays
• Oct 30: Michael Bachmann
  Folding and aggregation of protein-like heteropolymers at mesoscopic scales
• Oct 23: Mattias Ohlsson
  Mortality Prediction in Cardiac Surgery
• Oct 16: Michael Green
  Selection of ECG leads using ANN ensembles for pre-clinical assessment of chest pain patients
• Oct 9: Bo Söderberg
  Can you see the index profile of a lens?
• Sep 25: Yingchun Liu
  Unravel deregulated cellular signaling pathways by integrating gene expression and regulatory motifs analyses
• Sep 18: Cecilia Ritz
  Reducing overestimation in microarray missing value imputation
• Sep 11: Anders Dellson, Mitrionics AB
  Open source blasting with field programmable gate arrays
• Sep 4: Anders Irbäck
  Beta-hairpin folding
• Jun 12: Thomas Breslin, Malmö University Hospital
  Venous thromboembolism: from good old clinical markers to proteomic treasure hunting
• May 29: Karoline Wiesner, University of California Davis
  Complexity in quantum processes
• May 22: Christer Löfstedt, Chemical Ecology and Ecotoxicology
  Evolution of pheromone communication in moths
• May 15: Henrik Jönsson
  Computational Biology & Biological Physics in Arabidopsis
• May 8: Dan-E. Nilsson, Cell and Organism Biology
  The eye machine
• Apr 24: Pontus Melke
  A rate equation approach to elucidate the kinetics and robustness of the TGF-β pathway
• Apr 10: Simon Mitternacht
  Thermal unfolding of Ubiquitin and charges in water
• Apr 3: Hans-Uno Bengtsson
  On the universality of capillary properties
• Mar 27: Peter Johansson
  Building a classifier – a comparison of six strategies
• Mar 20: Patrik Edén
  Mathematical modelling of cancer stem cells
• Mar 13: Mai Suan Li, Warsaw
  Scaling properties of protein folding and misfolding
• Mar 6: Liwen You
  Detect rare cases vs. decrease false positive rate
• Feb 27: Carl Troein
  A toy genome
• Feb 20: Morten Krogh
  Missing values in 2D gel data sets
• Feb 13: Carsten Peterson
  Transcriptional dynamics of the embryonic stem cell switch
• Feb 6: Stefan Schnabel Thomas Vogel, Leipzig
  Multicanonical and chain-growth simulations of polymer chains
• Jan 30: Markus Ringnér
  Taxonomy of breast cancer
• Jan 23: Anders Castor, Hematopoietic Stem Cell Lab.
  Normal and malignant stem cells in leukemia
• Jan 16: Michael Green
  Automatic relevance determination and model comparison in neural networks
• Jan 9: Dennis Hasselquist, Animal Ecology
  Genomics of birdsong behaviour

• 2005

• Dec 12: Jari Häkkinen
  Automatic de novo detection of protein modifications
• Dec 5: Jure Piškur, Cell and Organism Biology
  Comparative genomics: a tool to understand yeast evolution
• Nov 28: Mattias Ohlsson
  Scored area under curve (AUC)
• Nov 21: Bo Söderberg
  Fish-eye lenses and the Abel transform
• Nov 14: Marcus Heisler, Caltech
  Plant development
• Nov 7: Yingchun Liu
  Pathway activity analysis by using motifs
• Oct 31: Cecilia Ritz
  Missing values in microarray data – useful or not?
• Oct 24: Henrik Jönsson
  Microfluidic chemostat experiments and computational models
• Oct 17: Anders Irbäck
  PROFASI: a Monte Carlo simulation package for protein folding and aggregation
• Oct 10: Sune Lehmann, DTU, Denmark
  Segmentation and tracking in biological systems
• Oct 3: Ulrike Nuber, Cancer Stem Cell Biology
  Adult neural stem cells: from genes to systems
• Sep 26: Dag Ahren, Microbial Ecology
  Measuring genome conservation across taxa: divided strains and united kingdoms
• Sep 19: Michael Bachmann, Leipzig
  Polymers astray: folding and binding near attractive substrates
• Sep 12: Henrik Semb, Stem Cell and Pancreas Developmental Biology
  Human embryonic stem cells
• Sep 5: Björn Canbäck, Microbial Ecology
  The global distribution of marine bacterioplankton
• Jun 13: Peter Johansson
  WeNNI: a weighted approach for preprocessing of microarray data
• May 30: Hans-Uno Bengtsson
  On the universality of capillary constants, or capillaries as biological atoms
• May 23: Lars Gislén
  Advanced optics in a jellyfish eye.
• May 16: Garry Gippert
  Information beast and protein beauty: distance-based statistical potentials used to evaluate 3D models
• May 9: Cecilia Ritz
  Leukemia diagnosis – classification using kNN
• May 2: Rikard Alm
  A proteomic study of strawberry allergen
• Apr 25: Carl Troein
  Scaling of gene categories in genomes
• Apr 18: Morten Krogh
  Microarray analysis of brain cancer
• Apr 11: Björn Samuelsson
  Attractors in synchronous random boolean networks
• Apr 4: Liwen You
  Apoptosis and caspases
• Mar 21: Michael Green
  Performance estimation using cross testing
• Mar 14: Markus Ringnér
  Untranslated regions of mRNA
• Mar 7: Jari Häkkinen
  Cluster analysis of mass spectra
• Feb 28: Bo Söderberg
  Why I like the expression eN2/2 so much more than 2N(N-1)/2
• Feb 21: Mattias Ohlsson
  Decision support for acute coronary syndromes
• Feb 14: Yingchun Liu
  Proteomics strategies for biology and medicine
• Feb 7: Kasper Astrup Eriksen
  An experimental screen for non-neutrally evolving genes in a clade of symbiotic fungi
• Jan 31: Sandipan Mohanty
  Protein folding, unfolding, and misfolding
• Jan 24: Andreas Wacker, Math. Physics
  Superlattices – a model system for non-linear transport
• Jan 17: Henrik Jönsson
  An explicit spatial model of yeast microcolony growth
• Jan 10: Peter Johansson
  Key players in melanoma

• 2004

• Dec 13: Kiran Raosaheb Patil (Guest)
  Understanding transcriptional regulation of metabolism
• Dec 6: Anders Irbäck
  Mechanical unfolding of ubiquitin
• Nov 29: Patrik Edén
  Gene expression analysis of 5q- myelodysplastic syndroms
• Nov 22: Garry Gippert
  Proline pucker, pair potentials and positional disorder in protein structure modeling. (Thursday surprise menu)
• Nov 15: Thomas Breslin
  Chipping B cell differentiation
• Nov 8: Kim Sneppen (Guest)
  Transcription/translation dynamics modeling
• Oct 25: Thomas Hamelryck (Guest)
  A measure of amino solvent exposure & Biopython and Mocapy (a dynamic bayesian networks toolkit)
• Oct 18: Ala Trusina (Guest)
  Information horizons in complex networks
• Oct 11: Carl Troein
  Pathway profiling of breast cancer tumors
• Oct 4: Cecilia Ritz
  Predicting distant recurrences in CMF-treated breast cancer
• Sep 27: Morten Krogh
  Proteomics analysis of cancer tissues
• Sep 20: Björn Samuelsson
  Nested canalyzing rules in random Boolean networks
• Sep 13: Liwen You
  ISMB2004 paper: predicting genetic regulatory response using classification
• Sep 6: Markus Ringnér
  ISMB/ECCB 2004 overview
• Jun 14: Ylva Aspenberg
  Modelling the stem cells of the adult mammalian brain
• Jun 7: Michael Green
  Recognising a pattern featured object in a RoboCup environment
• May 24: Jacob Bock Axelsen (Guest)
  On the efficiency of translation regulation: the unfolded protein response
• May 17: Uli Hansmann (Guest)
  Computer simulations of small proteins
• May 10: No group meeting
  Källén symposium in the afternoon
• May 3: Udo Haecker, Dept. of Cell & Mol. Biology
  The role of polysaccharides in the shaping of morphogen gradients
• Apr 26: Jari Häkkinen
  Proteios and HUPO PSI standards
• Apr 19: Mattias Ohlsson
  Cross-validation
• Apr 5: Kasper Eriksen
  Localization of DNA damage by charge exchanging repair enzymes: effects of cooperativity on detection time
• Mar 29: Bo Söderberg
  Generating function techniques in branching processes
• Mar 22: Sandipan Mohanty
  Simulating peptide aggregation
• Mar 15: Jan Forsman, Theor. Chemistry
  Theoretical models of surface forces in polymer solutions: the importance of explicit solvent representation
• Mar 8: Hemang Parikh (Guest)
  PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
• Mar 1: Carsten Peterson
  Random Boolean genetic networks revisited
• Feb 23: Peter Johansson
  An ML-estimation of discrimination when using measurements with varying quality
• Feb 9: Henrik Jönsson
  Phyllotaxis in plants
• Feb 2: Giorgio Favrin
  Non-native structures and amyloid formations
• Jan 26: Jesper Borg(Guest)
  Fold-x: a force field to predict protein folding and stability
• Jan 19: Anders Irbäck
  Peptide folding and aggregation
• Jan 12: Selpi (Guest)
  An FDM prototype for pathway and protein interaction data

• 2003

• Dec 15: Thomas Breslin
  Rank based meta analysis of genomic data
• Dec 8: Garry Gippert, Dept. of Mol. Biophysics
  Sidechain packing models and statistical potentials used to evalute the quality of protein sequence-to-structure alignments
• Dec 1: Patrik Edén
  Effects of different BrdU staining protocols
• Nov 24: Carl Troein
  Random boolean network models and the yeast transcriptional network
• Nov 17: Yingchun Liu
  Murine embryonic fibroblast (MEF) project
• Nov 10: Cecilia Ritz
  Gene expression profiles and clinical observables in breast cancer prognosis
• Nov 3: Morten Krogh
  A rat model of ischemic stroke
• Oct 27: Stefan Karlsson, Dept. of Mol. Med.
  The role of TGF-beta in the regulation of hematopoiesis
• Oct 20: Björn Samuelsson
  Diffusion in a periodic potential – with applications from fluidics for DNA analysis
• Oct 13: Liwen You
  Why neural networks should not be used for HIV-1 protease cleavage site prediction
• Oct 6: Andreas Arvidsson, Restorative Neurology Section
  Neurogenesis from stem- and progenitor cells in the adult brain
• Sep 29: Markus Ringnér
  RNA interference
• Sep 22: Jari Häkkinen
  The Lund Swegene Bioinformatics Facility
• Sep 15: Mattias Ohlsson
  Regional cerebral blood flow in Alzheimers disease: classification and analysis of heterogeneity
• Sep 8: Kasper Eriksen
  A connection between gene expression and the strength of transcription factor binding
• Sep 1: Fredrik Sjunnesson
  A model study of folding thermodynamics of three beta-sheet peptides
• Aug 25: Hans-Uno Bengtsson
  Are capillary properties really universal?
• Aug 18: Peter Johansson
  Support vector machines
• Aug 11: Jonas Tegenfeldt, Div. of Solid State Physics
  Micro- and nanofluidics for DNA analysis
• Jun 16: Henrik Jönsson
  Plant stem cells – from in vivo to in silico, and back?
• Jun 10: Samuel Andersson
  Bioinformatic exploration of antisense transcripts
• Jun 2: Cecilia Clementi, Rice University
  Topology and energetics in protein systems: from folding to function
• May 26: Bo Söderberg
  Random Feynman graphs
• May 19: Carl Troein
  Bioarray software environment (BASE)
• May 12: Stefan Wallin
  Two-state folding over a weak free-energy barrier
• May 5: Fredrik Sjunnesson
  Context dependent hydrogen bonds and the green mamba
• Apr 28: Giorgio Favrin
  A Transition State Analysis with a Derived Potential for SH3
• Apr 22: György Marko-Varga, AstraZeneca
  Protein expression analysis in disease – the new challenge
• Apr 14: Sten Eirik Jakobsen, Stem Cell Center
  Identification, characterization and molecular regulation of hematopoietic stem cells
• Apr 7: Anders Irbäck
  Study of a protein that is unstructured in isolation
• Mar 31: Thomas Breslin
  Review of selected talks at AAAS/MGED (Denver, Febr. 2003)
• Mar 17: Patrik Edén
  Simplistic systems biology?
• Mar 10: Carsten Peterson
  Computational aspects of biology development
• Mar 3: Morten Krogh
  Regulation at a distance in Yeast?
• Feb 24: Yingchun Liu
  Class discovery in expression data
• Feb 17: Björn Samuelsson
  To simulate protein folding with monte carlo dynamics
• Feb 10: Markus Ringnér
  The impact of DNA copy number on gene expression
• Feb 3: Carl Troein
  A new approach to random boolean networks
• Jan 27: Patrik Medstrand, Dept. of Cell & Mol. Biology
  Transposable elements in humans: genome distribution and impact on gene regulation
• Jan 20: Kasper Eriksen
  The Young data
• Jan 13: Henrik Haraldsson
  Hermite decomposition of ECGs for training Neural Networks

• 2002

• Dec 10: Peter Johansson
  Analysis of gene expression profiles of melanoma
• Dec 3: Jari Häkkinen
  Protein identification
• Nov 22: Pär-Ola Bendahl, Dept. of Oncology
  Linkage-disequilibrium analysis
• Nov 19: Mattias Ohlsson
  Protein structure alignment
• Nov 12: Hans-Uno Bengtsson
  A simple model for the arterial system
• Nov 5: Bo Söderberg
  Random graphs
• Oct 21: Stefan Wallin
  Similarity measures for proteins
• Oct 21: Fredrik Sjunnesson
  Why water makes protein folding messy
• Oct 14: Giorgio Favrin
  Protein structure prediction
• Oct 7: Anders Irbäck
  Protein folding
• Sep 30: Thomas Breslin
  Probabilistic estimation of microarray data reliability and underlying gene expression
• Sep 23: Patrik Edén
  Monkey Index, now with P-values